Building Dasobert-live
Biojava present: true
Java Home: /usr/lib/jvm/java-1.5.0-sun-1.5.0.10/jre
JUnit present: true
JUnit supported by Ant: true
DocCheck present: ${doccheck.present}
Building Dasobert-live
Biojava present: true
Java Home: /usr/lib/jvm/java-1.5.0-sun-1.5.0.10/jre
JUnit present: true
JUnit supported by Ant: true
DocCheck present: ${doccheck.present}
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Running tests: **
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegReportErrorHandler.java:7: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.ValidationUnrecoverableException;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegReportErrorHandler.java:91: cannot find symbol
symbol : class ValidationUnrecoverableException
location: class org.biojava.dasobert.das.validation.RegReportErrorHandler
throws ValidationUnrecoverableException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:11: package org.iso_relax.dispatcher does not exist
import org.iso_relax.dispatcher.Dispatcher;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:12: package org.iso_relax.dispatcher does not exist
import org.iso_relax.dispatcher.SchemaProvider;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:13: package org.iso_relax.dispatcher.impl does not exist
import org.iso_relax.dispatcher.impl.DispatcherImpl;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:20: package com.sun.msv.driver.textui does not exist
import com.sun.msv.driver.textui.Debug;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:21: package com.sun.msv.driver.textui does not exist
import com.sun.msv.driver.textui.DebugController;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:22: package com.sun.msv.driver.textui does not exist
import com.sun.msv.driver.textui.ReportErrorHandler;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:23: package com.sun.msv.grammar does not exist
import com.sun.msv.grammar.Grammar;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:24: package com.sun.msv.grammar.relax does not exist
import com.sun.msv.grammar.relax.RELAXModule;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:25: package com.sun.msv.grammar.util does not exist
import com.sun.msv.grammar.util.ExpressionPrinter;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:26: package com.sun.msv.reader.util does not exist
import com.sun.msv.reader.util.GrammarLoader;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:27: package com.sun.msv.relaxns.grammar does not exist
import com.sun.msv.relaxns.grammar.RELAXGrammar;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:28: package com.sun.msv.util does not exist
import com.sun.msv.util.Util;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:29: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.DocumentDeclaration;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:30: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.Verifier;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:31: package com.sun.msv.verifier.regexp does not exist
import com.sun.msv.verifier.regexp.REDocumentDeclaration;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:237: cannot find symbol
symbol : class SchemaProvider
location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.RELAXNSVerifier
private final SchemaProvider sp;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:239: cannot find symbol
symbol : class SchemaProvider
location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.RELAXNSVerifier
RELAXNSVerifier(SchemaProvider sp) {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:258: cannot find symbol
symbol : class DocumentDeclaration
location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.SimpleVerifier
private final DocumentDeclaration docDecl;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:260: cannot find symbol
symbol : class DocumentDeclaration
location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.SimpleVerifier
SimpleVerifier(DocumentDeclaration docDecl) {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:6: package org.relaxng.datatype does not exist
import org.relaxng.datatype.Datatype;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:12: package com.sun.msv.datatype.xsd does not exist
import com.sun.msv.datatype.xsd.StringType;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:13: package com.sun.msv.grammar does not exist
import com.sun.msv.grammar.IDContextProvider2;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:14: package com.sun.msv.util does not exist
import com.sun.msv.util.DatatypeRef;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:15: package com.sun.msv.util does not exist
import com.sun.msv.util.StartTagInfo;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:16: package com.sun.msv.util does not exist
import com.sun.msv.util.StringRef;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:17: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.AbstractVerifier;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:18: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.Acceptor;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:19: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.DocumentDeclaration;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:20: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.ErrorInfo;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:21: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.IVerifier;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:22: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.ValidationUnrecoverableException;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:23: package com.sun.msv.verifier does not exist
import com.sun.msv.verifier.ValidityViolation;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:24: package com.sun.msv.verifier.ErrorInfo does not exist
import com.sun.msv.verifier.ErrorInfo.ElementErrorInfo;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:25: package com.sun.msv does not exist
import com.sun.msv.*;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:35: cannot find symbol
symbol: class AbstractVerifier
public class RegVerifier extends AbstractVerifier implements IVerifier {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:35: cannot find symbol
symbol: class IVerifier
public class RegVerifier extends AbstractVerifier implements IVerifier {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:40: cannot find symbol
symbol : class Acceptor
location: class org.biojava.dasobert.das.validation.RegVerifier
protected Acceptor current;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:80: cannot find symbol
symbol : class StartTagInfo
location: class org.biojava.dasobert.das.validation.RegVerifier
private final StartTagInfo sti = new StartTagInfo(null, null, null, null, (IDContextProvider2)null);
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:87: cannot find symbol
symbol : class DocumentDeclaration
location: class org.biojava.dasobert.das.validation.RegVerifier
protected final DocumentDeclaration docDecl;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:112: cannot find symbol
symbol : class DocumentDeclaration
location: class org.biojava.dasobert.das.validation.RegVerifier
public RegVerifier(DocumentDeclaration documentDecl, ErrorHandler errorHandler) {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:118: cannot find symbol
symbol : class DatatypeRef
location: class org.biojava.dasobert.das.validation.RegVerifier
private final DatatypeRef characterType = new DatatypeRef();
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:119: cannot find symbol
symbol : class Datatype
location: class org.biojava.dasobert.das.validation.RegVerifier
public Datatype[] getLastCharacterType() {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:260: cannot find symbol
symbol : class StartTagInfo
location: class org.biojava.dasobert.das.validation.RegVerifier
protected void onNextAcceptorReady(StartTagInfo sti, Acceptor nextAcceptor) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:260: cannot find symbol
symbol : class Acceptor
location: class org.biojava.dasobert.das.validation.RegVerifier
protected void onNextAcceptorReady(StartTagInfo sti, Acceptor nextAcceptor) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:267: cannot find symbol
symbol : class DatatypeRef
location: class org.biojava.dasobert.das.validation.RegVerifier
private final DatatypeRef attributeType = new DatatypeRef();
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:269: cannot find symbol
symbol : class Acceptor
location: class org.biojava.dasobert.das.validation.RegVerifier
protected Datatype[] feedAttribute(Acceptor child, String uri, String localName, String qName, String value)
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:269: cannot find symbol
symbol : class Datatype
location: class org.biojava.dasobert.das.validation.RegVerifier
protected Datatype[] feedAttribute(Acceptor child, String uri, String localName, String qName, String value)
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:361: cannot find symbol
symbol : class StringRef
location: class org.biojava.dasobert.das.validation.RegVerifier
protected ValidityViolation onError(StringRef ref, String defaultMsg, ErrorInfo ei) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:361: cannot find symbol
symbol : class ErrorInfo
location: class org.biojava.dasobert.das.validation.RegVerifier
protected ValidityViolation onError(StringRef ref, String defaultMsg, ErrorInfo ei) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:361: cannot find symbol
symbol : class ValidityViolation
location: class org.biojava.dasobert.das.validation.RegVerifier
protected ValidityViolation onError(StringRef ref, String defaultMsg, ErrorInfo ei) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:370: cannot find symbol
symbol : class ErrorInfo
location: class org.biojava.dasobert.das.validation.RegVerifier
protected ValidityViolation onError(String msg, ErrorInfo ei) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:370: cannot find symbol
symbol : class ValidityViolation
location: class org.biojava.dasobert.das.validation.RegVerifier
protected ValidityViolation onError(String msg, ErrorInfo ei) throws SAXException {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:44: cannot find symbol
symbol : class Acceptor
location: class org.biojava.dasobert.das.validation.RegVerifier.Context
final Acceptor acceptor;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:47: cannot find symbol
symbol : class Acceptor
location: class org.biojava.dasobert.das.validation.RegVerifier.Context
Context(Context prev, Acceptor acc, int scl, int plv) {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:515: cannot find symbol
symbol : class ElementErrorInfo
location: class org.biojava.dasobert.das.validation.RegVerifier
public static class BadAttribute extends ElementErrorInfo {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:521: cannot find symbol
symbol : class StartTagInfo
location: class org.biojava.dasobert.das.validation.RegVerifier.BadAttribute
protected BadAttribute( StartTagInfo sti, String qn, String ns, String loc, String v ) {
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/DasRegistryOntologyLookUp.java:17: package javax.xml.rpc does not exist
import javax.xml.rpc.ServiceException;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/DasRegistryOntologyLookUp.java:19: package org.apache.axis does not exist
import org.apache.axis.AxisFault;
^
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das2/io/DASRegistryCoordinatesReaderXML.java:60: warning - @return tag has no arguments.
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1_6Validator.java:364: warning - @return tag has no arguments.
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1_6Validator.java:364: warning - @param argument "testcode" is not a parameter name.
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1Validator.java:381: warning - @return tag has no arguments.
/home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1Validator.java:381: warning - @param argument "testcode" is not a parameter name.
Building Dasobert-live
Biojava present: true
Java Home: /usr/lib/jvm/java-1.5.0-sun-1.5.0.10/jre
JUnit present: true
JUnit supported by Ant: true
DocCheck present: ${doccheck.present}
done with checkout, build
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