Building Dasobert-live Biojava present: true Java Home: /usr/lib/jvm/java-1.5.0-sun-1.5.0.10/jre JUnit present: true JUnit supported by Ant: true DocCheck present: ${doccheck.present} Building Dasobert-live Biojava present: true Java Home: /usr/lib/jvm/java-1.5.0-sun-1.5.0.10/jre JUnit present: true JUnit supported by Ant: true DocCheck present: ${doccheck.present} Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Running tests: ** /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegReportErrorHandler.java:7: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.ValidationUnrecoverableException; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegReportErrorHandler.java:91: cannot find symbol symbol : class ValidationUnrecoverableException location: class org.biojava.dasobert.das.validation.RegReportErrorHandler throws ValidationUnrecoverableException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:11: package org.iso_relax.dispatcher does not exist import org.iso_relax.dispatcher.Dispatcher; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:12: package org.iso_relax.dispatcher does not exist import org.iso_relax.dispatcher.SchemaProvider; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:13: package org.iso_relax.dispatcher.impl does not exist import org.iso_relax.dispatcher.impl.DispatcherImpl; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:20: package com.sun.msv.driver.textui does not exist import com.sun.msv.driver.textui.Debug; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:21: package com.sun.msv.driver.textui does not exist import com.sun.msv.driver.textui.DebugController; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:22: package com.sun.msv.driver.textui does not exist import com.sun.msv.driver.textui.ReportErrorHandler; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:23: package com.sun.msv.grammar does not exist import com.sun.msv.grammar.Grammar; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:24: package com.sun.msv.grammar.relax does not exist import com.sun.msv.grammar.relax.RELAXModule; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:25: package com.sun.msv.grammar.util does not exist import com.sun.msv.grammar.util.ExpressionPrinter; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:26: package com.sun.msv.reader.util does not exist import com.sun.msv.reader.util.GrammarLoader; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:27: package com.sun.msv.relaxns.grammar does not exist import com.sun.msv.relaxns.grammar.RELAXGrammar; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:28: package com.sun.msv.util does not exist import com.sun.msv.util.Util; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:29: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.DocumentDeclaration; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:30: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.Verifier; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:31: package com.sun.msv.verifier.regexp does not exist import com.sun.msv.verifier.regexp.REDocumentDeclaration; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:237: cannot find symbol symbol : class SchemaProvider location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.RELAXNSVerifier private final SchemaProvider sp; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:239: cannot find symbol symbol : class SchemaProvider location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.RELAXNSVerifier RELAXNSVerifier(SchemaProvider sp) { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:258: cannot find symbol symbol : class DocumentDeclaration location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.SimpleVerifier private final DocumentDeclaration docDecl; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegistryRelaxNG.java:260: cannot find symbol symbol : class DocumentDeclaration location: class org.biojava.dasobert.das.validation.RegistryRelaxNG.SimpleVerifier SimpleVerifier(DocumentDeclaration docDecl) { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:6: package org.relaxng.datatype does not exist import org.relaxng.datatype.Datatype; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:12: package com.sun.msv.datatype.xsd does not exist import com.sun.msv.datatype.xsd.StringType; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:13: package com.sun.msv.grammar does not exist import com.sun.msv.grammar.IDContextProvider2; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:14: package com.sun.msv.util does not exist import com.sun.msv.util.DatatypeRef; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:15: package com.sun.msv.util does not exist import com.sun.msv.util.StartTagInfo; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:16: package com.sun.msv.util does not exist import com.sun.msv.util.StringRef; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:17: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.AbstractVerifier; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:18: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.Acceptor; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:19: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.DocumentDeclaration; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:20: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.ErrorInfo; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:21: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.IVerifier; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:22: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.ValidationUnrecoverableException; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:23: package com.sun.msv.verifier does not exist import com.sun.msv.verifier.ValidityViolation; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:24: package com.sun.msv.verifier.ErrorInfo does not exist import com.sun.msv.verifier.ErrorInfo.ElementErrorInfo; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:25: package com.sun.msv does not exist import com.sun.msv.*; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:35: cannot find symbol symbol: class AbstractVerifier public class RegVerifier extends AbstractVerifier implements IVerifier { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:35: cannot find symbol symbol: class IVerifier public class RegVerifier extends AbstractVerifier implements IVerifier { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:40: cannot find symbol symbol : class Acceptor location: class org.biojava.dasobert.das.validation.RegVerifier protected Acceptor current; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:80: cannot find symbol symbol : class StartTagInfo location: class org.biojava.dasobert.das.validation.RegVerifier private final StartTagInfo sti = new StartTagInfo(null, null, null, null, (IDContextProvider2)null); ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:87: cannot find symbol symbol : class DocumentDeclaration location: class org.biojava.dasobert.das.validation.RegVerifier protected final DocumentDeclaration docDecl; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:112: cannot find symbol symbol : class DocumentDeclaration location: class org.biojava.dasobert.das.validation.RegVerifier public RegVerifier(DocumentDeclaration documentDecl, ErrorHandler errorHandler) { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:118: cannot find symbol symbol : class DatatypeRef location: class org.biojava.dasobert.das.validation.RegVerifier private final DatatypeRef characterType = new DatatypeRef(); ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:119: cannot find symbol symbol : class Datatype location: class org.biojava.dasobert.das.validation.RegVerifier public Datatype[] getLastCharacterType() { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:260: cannot find symbol symbol : class StartTagInfo location: class org.biojava.dasobert.das.validation.RegVerifier protected void onNextAcceptorReady(StartTagInfo sti, Acceptor nextAcceptor) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:260: cannot find symbol symbol : class Acceptor location: class org.biojava.dasobert.das.validation.RegVerifier protected void onNextAcceptorReady(StartTagInfo sti, Acceptor nextAcceptor) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:267: cannot find symbol symbol : class DatatypeRef location: class org.biojava.dasobert.das.validation.RegVerifier private final DatatypeRef attributeType = new DatatypeRef(); ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:269: cannot find symbol symbol : class Acceptor location: class org.biojava.dasobert.das.validation.RegVerifier protected Datatype[] feedAttribute(Acceptor child, String uri, String localName, String qName, String value) ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:269: cannot find symbol symbol : class Datatype location: class org.biojava.dasobert.das.validation.RegVerifier protected Datatype[] feedAttribute(Acceptor child, String uri, String localName, String qName, String value) ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:361: cannot find symbol symbol : class StringRef location: class org.biojava.dasobert.das.validation.RegVerifier protected ValidityViolation onError(StringRef ref, String defaultMsg, ErrorInfo ei) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:361: cannot find symbol symbol : class ErrorInfo location: class org.biojava.dasobert.das.validation.RegVerifier protected ValidityViolation onError(StringRef ref, String defaultMsg, ErrorInfo ei) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:361: cannot find symbol symbol : class ValidityViolation location: class org.biojava.dasobert.das.validation.RegVerifier protected ValidityViolation onError(StringRef ref, String defaultMsg, ErrorInfo ei) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:370: cannot find symbol symbol : class ErrorInfo location: class org.biojava.dasobert.das.validation.RegVerifier protected ValidityViolation onError(String msg, ErrorInfo ei) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:370: cannot find symbol symbol : class ValidityViolation location: class org.biojava.dasobert.das.validation.RegVerifier protected ValidityViolation onError(String msg, ErrorInfo ei) throws SAXException { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:44: cannot find symbol symbol : class Acceptor location: class org.biojava.dasobert.das.validation.RegVerifier.Context final Acceptor acceptor; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:47: cannot find symbol symbol : class Acceptor location: class org.biojava.dasobert.das.validation.RegVerifier.Context Context(Context prev, Acceptor acc, int scl, int plv) { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:515: cannot find symbol symbol : class ElementErrorInfo location: class org.biojava.dasobert.das.validation.RegVerifier public static class BadAttribute extends ElementErrorInfo { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/RegVerifier.java:521: cannot find symbol symbol : class StartTagInfo location: class org.biojava.dasobert.das.validation.RegVerifier.BadAttribute protected BadAttribute( StartTagInfo sti, String qn, String ns, String loc, String v ) { ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/DasRegistryOntologyLookUp.java:17: package javax.xml.rpc does not exist import javax.xml.rpc.ServiceException; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das/validation/DasRegistryOntologyLookUp.java:19: package org.apache.axis does not exist import org.apache.axis.AxisFault; ^ /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/das2/io/DASRegistryCoordinatesReaderXML.java:60: warning - @return tag has no arguments. /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1_6Validator.java:364: warning - @return tag has no arguments. /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1_6Validator.java:364: warning - @param argument "testcode" is not a parameter name. /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1Validator.java:381: warning - @return tag has no arguments. /home/andreas/cruisecontrol/projects/dasobert/src/org/biojava/dasobert/dasregistry/Das1Validator.java:381: warning - @param argument "testcode" is not a parameter name. Building Dasobert-live Biojava present: true Java Home: /usr/lib/jvm/java-1.5.0-sun-1.5.0.10/jre JUnit present: true JUnit supported by Ant: true DocCheck present: ${doccheck.present} done with checkout, build
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