API Specification Errors
Errors in Class: org.biojava.bio.alignment.AbstractULAlignment


Category 1: Class Error

Class AbstractULAlignment
  • Class missing comment. 
/**
 * 
 *
 * @author unattributed
 * @version %I% %G%
 */

Category 2: Member Error

alphabet
  • Field missing comment. 
/**  */
labelsAt(int)
  • Method missing comment. 
/**
 *
 */
labelsInRange(Location)
  • Method missing comment. 
/**
 *
 */
symbolListIterator()
  • Method missing comment. 
/**
 *
 */
debug(String)
  • Method missing comment. 
/**
 *
 */
rightMost()
  • Method missing comment. 
/**
 *
 */
orderedLables(Comparator)
  • Method missing comment. 
/**
 *
 */
AbstractULAlignment$LeftRightLocationComparator.compare(Object, Object)
  • Method missing comment. 
/**
 *
 */
AbstractULAlignment$SubULAlignment
  • Class missing comment. 
/**
 * 
 */
AbstractULAlignment$SubULAlignment.AbstractULAlignment.SubULAlignment(Set, Location)
  • Constructor missing comment. 
/**
 * Constructs an AbstractULAlignment$SubULAlignment object.
 *
 * @param labels  a Set object
 * @param loc     a Location object
 * @throws IndexOutOfBoundsException ...
 */
AbstractULAlignment$SubULAlignment.listIntersection(List, List)
  • Method missing comment. 
/**
 *
 */
AbstractULAlignment$SubULAlignment.labelsAt(int)
  • Method missing comment. 
/**
 *
 */
AbstractULAlignment$SubULAlignment.labelsInRange(Location)
  • Method missing comment. 
/**
 *
 */
AbstractULAlignment$SubULAlignment.getLabels()
  • Method missing comment, but reasonably self-evident. 
/**
 * Returns the labels value.
 */
AbstractULAlignment$SubULAlignment.symbolListIterator()
  • Method missing comment. 
/**
 *
 */

Category 3: Tag Error

leftMost()
  • Missing @return tag. 
 *
 * @return an Object

Category 4: Text/Link Error

symbolAt(int)
  • Html Error in First Sentence
    --Missing a period 
this will return the ambiguity symbol associated with all symbols in that column













subAlignment(Set, int, int)







    

  • Html Error in First Sentence


    
--Missing a period




Retreives a subAlignment













AbstractULAlignment$SubULAlignment.locInAlignment(Object)







    

  • Html Error in First Sentence


    
--Missing a period




The location of an individual SymbolList relative to overall Alignment












Explanation of Columns





Left Column

Identifies the error or warning.

Right Column

Shows the comment-text that generated the error in red.



Displays a template you can cut and paste in black.