API Specification Errors
Errors in Package: org.biojava.bio.seq.io.agave

Package

Category 3: Tag Error
  • No @since tag at end of package.html.

Class/Interface

  Missing Comments Minor Errors
Name Class/Iface Member Tag Text/Link Warning
Agave2AgaveAnnotFilter -- 1 -- 1 --
AGAVEAltIdsPropHandler -- 1 -- 1 --
AGAVEAnnotationsHandler 1 1 1 -- --
AGAVEAnnotFilter -- 45 -- -- --
AGAVEAnnotFilterFactory 1 1 -- -- --
AGAVEAssemblyHandler 1 1 1 -- --
AGAVEBioSeqCallbackItf -- 2 1 -- --
AGAVEBioSeqHandler -- 2 -- 1 --
AGAVEBioSequenceHandler -- 3 -- 1 --
AGAVECallbackItf -- 1 -- -- --
AGAVECdsHandler -- 1 -- 1 --
AGAVEChromosomeCallbackItf -- 1 -- -- --
AGAVEChromosomeHandler -- 2 -- 1 --
AGAVEClassificationHandler 1 1 1 -- --
AGAVECompResultHandler 1 3 1 -- --
AGAVEComputationHandler 1 1 1 1 --
AGAVEContigCallbackItf -- 2 -- -- --
AGAVEContigHandler -- 2 -- 1 --
AGAVEDbId 1 7 1 -- --
AGAVEDbIdCallbackItf -- 1 -- 1 --
AGAVEDbIdPropCallbackItf 1 1 -- -- --
AGAVEDbIdPropHandler -- 1 -- 1 --
AGAVEDescPropHandler -- 1 -- 1 --
AGAVEElementIdPropHandler 1 1 1 -- --
AGAVEEvidenceCallbackItf 1 1 -- -- --
AGAVEEvidenceHandler 1 1 1 -- --
AGAVEExonsPropHandler 1 1 1 -- --
AGAVEFeatureCallbackItf -- 2 -- -- --
AGAVEFragmentOrderHandler 1 3 1 -- --
AGAVEFragmentOrientationHandler 1 1 1 -- --
AGAVEGeneHandler 1 3 1 -- --
AGAVEHandler -- 1 1 2 --
AGAVEIdAlias 1 3 1 -- --
AGAVEIdAliasCallbackItf 1 1 -- -- --
AGAVEIdAliasPropHandler 1 1 1 -- --
AGAVEKeywordPropHandler -- 1 -- 1 --
AGAVEMapLocation 1 16 1 -- --
AGAVEMapLocationPropHandler 1 2 1 -- --
AGAVEMapPosition 1 5 1 -- --
AGAVEMapPositionPropHandler 1 1 1 -- --
AGAVEMatchAlignPropHandler -- 1 -- 1 --
AGAVEMatchDescPropHandler -- 1 -- 1 --
AGAVEMatchRegion -- 9 -- 1 --
AGAVEMatchRegionPropHandler -- 1 -- 1 --
AGAVEMrnaHandler -- 1 -- 1 --
AGAVENotePropHandler -- 1 -- 1 --
AGAVEPredictedProteinHandler -- 1 -- 1 --
AGAVEProperty 1 10 -- -- --
AGAVEQualifierPropHandler 1 1 1 -- --
AGAVEQueryRegion 1 7 1 -- --
AGAVEQueryRegionPropHandler 1 1 1 -- --
AGAVERelatedAnnot 1 9 1 -- --
AGAVERelatedAnnotPropHandler 1 2 2 -- --
AGAVEResultGroupHandler 1 1 1 -- --
AGAVEResultPropertyPropHandler 1 1 1 -- --
AGAVESciPropertyPropHandler -- 1 -- 1 --
AGAVESeqFeatureHandler -- 3 -- 1 --
AGAVESeqLocationPropHandler -- 1 -- 1 --
AGAVESeqMapHandler -- 1 -- 1 --
AGAVESeqPropHandler -- 1 -- 1 --
AGAVETranscriptHandler -- 1 -- 1 --
AGAVEUnorderedFragmentsHandler -- 1 -- 1 --
AGAVEViewPropHandler -- 1 -- -- --
AgaveWriter -- 8 11 14 --
AGAVEXref -- 6 3 3 --
AGAVEXrefCallbackItf 1 1 -- -- --
AGAVEXrefPropHandler -- 1 -- 1 --
AGAVEXrefPropPropHandler -- 1 -- 1 --
AGAVEXrefs -- 1 5 6 --
AGAVEXrefsPropHandler -- 1 -- 1 --
DelegationManager -- 3 -- -- --
ElementRecognizer -- 6 -- 1 --
Embl2AgaveAnnotFilter -- 1 -- 1 --
SAX2StAXAdaptor -- -- 1 -- --
SequenceHandler -- -- -- 1 --
SimpleAnnotFilter -- 8 3 1 --
StAXContentHandler -- 11 -- -- --
StAXContentHandlerBase -- -- 1 -- --
StAXFeatureHandler -- 13 19 5 --
StAXHandlerFactory -- -- 1 -- --
StAXPropertyHandler -- 4 14 -- --
UtilHelper -- -- 3 1 --

Explanation of Terms

Member
An inner class, inner interface, field, constructor, or method.
Note:
This table shows total numbers for the minor errors, rather than the number of items that have such an error. (If there was one method missing 4 tags, this table would show "4" in the Tags column.)