API Specification Errors
Errors in Class: org.biojava.bio.symbol.CodonPrefTools


Category 2: Member Error

readFromXML(InputStream)
  • Method missing comment. 
/**
 *
 */

Category 3: Tag Error

getCodonPreference(String)
  • Missing tag.
  • Missing @return tag. 
 *
 * @param id  a String
 * @return a CodonPref object
getDinucleotideAlphabet()
  • Missing @return tag. 
 *
 * @return a FiniteAlphabet object representing the dinucleotide alphabet value
writeToXML(CodonPref, PrintWriter)
  • Missing tag.
  • Missing @throws tag. 
 *
 * @param codonPref  a CodonPref object
 * @param writer     a PrintWriter object
 * @throws NullPointerException ...
 * @throws IOException ...
 * @throws IllegalSymbolException ...
 * @throws BioException ...
readFromXML(InputStream, String)
  • Missing tag.
  • Missing @return tag.
  • Missing @throws tag. 
 *
 * @param prefStream  an InputStream object
 * @return a CodonPref object
 * @throws BioException ...
readFromXML(InputStream, CodonPrefFilter)
  • Missing tag.
  • Missing @throws tag. 
 *
 * @param prefStream  an InputStream object
 * @param filter      a CodonPrefFilter object
 * @throws BioException ...
translateCUD(InputStream, OutputStream)
  • Missing tag.
  • Missing @throws tag. 
 *
 * @param input   an InputStream object
 * @param output  an OutputStream object
 * @throws IOException ...

Category 4: Text/Link Error

Class CodonPrefTools
  • Html Error in First Sentence
    --Missing a period 
An utility class for codon preferences













DROSOPHILA_MELANOGASTER_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Drosophila melanogaster codon preferences













MAN_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Homo sapiens codon preferences













MOUSE_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Mus musculus codon preferences













RAT_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Rattus norvegicus codon preferences













FUGU_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Takifugu rubripes codon preferences













WORM_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Caenorhabditis elegans codon preferences













CEREVISIAE_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Saccharomyces cerevisiae codon preferences













POMBE_NUCLEAR







    

  • Html Error in First Sentence


    
--Missing a period




Schizosaccharomyces pombe codon preferences













ECOLI







    

  • Html Error in First Sentence


    
--Missing a period




Escherichia coli codon preferences












Explanation of Columns





Left Column

Identifies the error or warning.

Right Column

Shows the comment-text that generated the error in red.



Displays a template you can cut and paste in black.