Biojava Structure - Hibernate

This project provides Hibernate persistance mappings for the protein structure API of BioJava.

BioJava Structure Hibernate allows you to:

serialize your PDB files into a relational database (e.g.using MySQL).
quickly search through the PDB header information
create lists of PDB files (e.g. get all structures with resolution < 4 A)

Installation

Please obtain a recent installation of Hibernate and BioJava. The .jar files that have been used for the current BioJava Structure Hibernate release are available from the svn repository.

This project mainly contains hibernate mapping files and only very few Java classes. We recommend to check out the source code as a new project in your favorite IDE and simply run the examples.

Source code

The source code of BioJava Structure Hibernate is available using subversion from http://www.spice-3d.org/svn/public/BioJavaHibernate/trunk/ to check out the code e.g. do a:


svn checkout http://www.spice-3d.org/svn/public/BioJavaHibernate/trunk/ ./BioJavaHibernate

Documentation

Please view the examples.

License

This project is available under the LGPL

Feedback

Please post to biojava-dev for feedback, or contact the author Andreas Prlic directly.