Examples
Memory Usage
Some PDB files can get quite big. In order for the examples to run fine, we recommend running them using java -Xmx300M.
How Tos:
- How to upload your PDB files into MySQL
- How to access the PDB files in the database
- How to access the PDB files when using multiple threads
All Atom representation
At the moment uploading the Atoms of PDB files is possible, but still rather slow. Until this has been optimized saving of atoms is uncommented by default. Saving the PDB header information, DBRefs, Compound, Chain and Group objects works fine. See the upload example for information how to re-enable atoms again. If you want to provide a patch for this, please contact the biojava-dev mailing list, or directly me.
© Andreas Prlic 2007