org.biojava.spice.feature
Interface Feature

All Known Implementing Classes:

AbstractFeature, FeatureImpl

public interface Feature

Author:

Andreas Prlic

Method Summary

void	addSegment(int start, int end, String name) add a segment to this feature
void	addSegment(Segment s)
Object	clone()
boolean	equals(Feature feat) test if two features are equivalent
String	getLink()
String	getMethod()
String	getName()
String	getNote()
String	getScore()
List	getSegments()
String	getSource()
String	getType()
boolean	overlaps(int seqPosition) returns true if the specified sequence position is within the range of this Feature
void	setLink(String lnk)
void	setMethod(String methd)
void	setName(String nam)
void	setNote(String nte)
void	setScore(String score)
void	setSource(String s)
void	setType(String typ)
String	toString()

Method Detail

clone

public Object clone()

overlaps

public boolean overlaps(int seqPosition)

returns true if the specified sequence position is within the range of this Feature

Parameters:

seqPosition - the position to check

Returns:

true if the position is within the ranges of the segments of this feature

toString

public String toString()

setSource

public void setSource(String s)

getSource

public String getSource()

setName

public void setName(String nam)

getName

public String getName()

setMethod

public void setMethod(String methd)

getMethod

public String getMethod()

setType

public void setType(String typ)

getType

public String getType()

setNote

public void setNote(String nte)

getNote

public String getNote()

setLink

public void setLink(String lnk)

getLink

public String getLink()

setScore

public void setScore(String score)

getScore

public String getScore()

equals

public boolean equals(Feature feat)

test if two features are equivalent

Parameters:

feat - feature to compare with

Returns:

true if equivalend

addSegment

public void addSegment(int start,
                       int end,
                       String name)

add a segment to this feature

Parameters:

start - position

end - position

name - of feature

addSegment

public void addSegment(Segment s)

getSegments

public List getSegments()