Uses of Interface
org.biojava.spice.feature.Feature

Packages that use Feature

org.biojava.spice.feature	Everything related to Features.
org.biojava.spice.gui	A collection of classes related to the GUI.
org.biojava.spice.manypanel.drawable
org.biojava.spice.manypanel.eventmodel
org.biojava.spice.manypanel.renderer

Uses of Feature in org.biojava.spice.feature

Classes in org.biojava.spice.feature that implement Feature

class	AbstractFeature An Abstract class representing a Feature as being diplayed in the SeqFeaturePanel A feature corresponds to everything that is visible in a "line" and can contain one or multiple Segments.
class	FeatureImpl a class to store FeatureData and to visualize them coordinate system of features is always UniProt ! PDBresnum features served by DAS need to be converted into UniProt coord sys first.
class	HistogramFeature a class that represents Histogram Style features in addition to normal features they know about Max and Minimum scores for the whole line Histogram feautes have only one (Histogram) Segment, which contains the scores for each position

Methods in org.biojava.spice.feature that return Feature

Feature	AbstractSegment.getParent()
Feature	Segment.getParent()

Methods in org.biojava.spice.feature with parameters of type Feature

void	AbstractSegment.setParent(Feature f)
boolean	Feature.equals(Feature feat) test if two features are equivalent
void	Segment.setParent(Feature f)
boolean	AbstractFeature.equals(Feature feat) test if two features are equivalent important: only comares type,method and source.

Uses of Feature in org.biojava.spice.gui

Methods in org.biojava.spice.gui with parameters of type Feature

void	SaveLoadSession.feature2XML(Feature f, XMLWriter xw)

Uses of Feature in org.biojava.spice.manypanel.drawable

Methods in org.biojava.spice.manypanel.drawable that return Feature

Feature[]

DrawableDasSource.getFeatures()

Methods in org.biojava.spice.manypanel.drawable with parameters of type Feature

void	DrawableDasSource.setFeatures(Feature[] feats) a way to set Features from the outside

Uses of Feature in org.biojava.spice.manypanel.eventmodel

Methods in org.biojava.spice.manypanel.eventmodel that return Feature

Feature

SpiceFeatureEvent.getFeature()

Methods in org.biojava.spice.manypanel.eventmodel with parameters of type Feature

void	SpiceFeatureEvent.setFeature(Feature feat)

Constructors in org.biojava.spice.manypanel.eventmodel with parameters of type Feature

SpiceFeatureEvent(SpiceDasSource source, Feature feature)

SpiceFeatureEvent(SpiceDasSource source, Feature feature, Segment s)

Uses of Feature in org.biojava.spice.manypanel.renderer

Methods in org.biojava.spice.manypanel.renderer that return Feature

static Feature	PDB2SeqPositionMapper.mapPDBFeature2Seq(Feature f, Chain sequence)
Feature	StructureScalePanel.getStructureFeature()

Methods in org.biojava.spice.manypanel.renderer with parameters of type Feature

static Feature	PDB2SeqPositionMapper.mapPDBFeature2Seq(Feature f, Chain sequence)
protected void	RowHeaderMouseListener.triggerLinkSelected(Feature f)
Container	SegmentPopupFrame.createContent(Feature f)
protected void	DasSourcePanel.checkDrawSelectedFeature(Feature feature, int featurePos, Graphics g, int y) check if the feature is selected, if yes, color the background in SELECTED_FEATURE_COLOR