org.biojava.spice.jmol
Class JmolSpiceTranslator

java.lang.Object
  org.biojava.spice.jmol.JmolSpiceTranslator

public class JmolSpiceTranslator

extends Object

Constructor Summary

JmolSpiceTranslator()

Method Summary

void	addPDBSequenceListener(SequenceListener li)
void	clearListeners()
void	createImage(String file, String type, int quality)
String	eval(String strEval)
float[][]	functionXY(String functionName, int x, int y)
void	handlePopupMenu(int x, int y)
void	newObjectRequested(String accessionCode)
void	newStructure(StructureEvent event)
void	noObjectFound(String accessionCode)
void	notifyAtomHovered(int atomIndex, String strInfo)
void	notifyAtomPicked(int atomIndex, String strInfo)
void	notifyFileLoaded(String fullPathName, String fileName, String modelName, Object clientFile, String errorMessage)
void	notifyFileNotLoaded(String fullPathName, String errorMsg)
void	notifyFrameChanged(int frameNo)
void	notifyFrameChanged(int frameNo, int fileNo, int modelNo, int firstNo, int LastNo)
void	notifyMeasurementsChanged()
void	notifyNewDefaultModeMeasurement(int count, String strInfo)
void	notifyNewPickingModeMeasurement(int iatom, String strMeasure)
void	notifyResized(int newWidth, int newHeight)
void	notifyScriptStart(String statusMessage, String additionalInfo)
void	notifyScriptTermination(String statusMessage, int msWalltime)
void	scriptEcho(String strEcho)
void	scriptStatus(String strStatus)
void	selectedChain(StructureEvent event)
void	sendConsoleEcho(String strEcho)
void	sendConsoleMessage(String strStatus)
void	sendSyncScript(String script, String appletName)
void	setCallbackFunction(String callbackType, String callbackFunction)
void	setJmolPopup(JmolPopup popup)
void	setJmolViewer(JmolViewer viewer)
void	setStatusMessage(String statusMessage)
void	showConsole(boolean showConsole)
void	showUrl(String urlString)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JmolSpiceTranslator

public JmolSpiceTranslator()

Method Detail

setJmolViewer

public void setJmolViewer(JmolViewer viewer)

setJmolPopup

public void setJmolPopup(JmolPopup popup)

notifyFileLoaded

public void notifyFileLoaded(String fullPathName,
                             String fileName,
                             String modelName,
                             Object clientFile,
                             String errorMessage)

notifyFileNotLoaded

public void notifyFileNotLoaded(String fullPathName,
                                String errorMsg)

setStatusMessage

public void setStatusMessage(String statusMessage)

scriptEcho

public void scriptEcho(String strEcho)

scriptStatus

public void scriptStatus(String strStatus)

notifyScriptTermination

public void notifyScriptTermination(String statusMessage,
                                    int msWalltime)

showUrl

public void showUrl(String urlString)

showConsole

public void showConsole(boolean showConsole)

handlePopupMenu

public void handlePopupMenu(int x,
                            int y)

notifyAtomPicked

public void notifyAtomPicked(int atomIndex,
                             String strInfo)

notifyMeasurementsChanged

public void notifyMeasurementsChanged()

notifyFrameChanged

public void notifyFrameChanged(int frameNo)

newStructure

public void newStructure(StructureEvent event)

selectedChain

public void selectedChain(StructureEvent event)

newObjectRequested

public void newObjectRequested(String accessionCode)

noObjectFound

public void noObjectFound(String accessionCode)

addPDBSequenceListener

public void addPDBSequenceListener(SequenceListener li)

clearListeners

public void clearListeners()

notifyNewDefaultModeMeasurement

public void notifyNewDefaultModeMeasurement(int count,
                                            String strInfo)

notifyNewPickingModeMeasurement

public void notifyNewPickingModeMeasurement(int iatom,
                                            String strMeasure)

notifyScriptStart

public void notifyScriptStart(String statusMessage,
                              String additionalInfo)

sendConsoleEcho

public void sendConsoleEcho(String strEcho)

sendConsoleMessage

public void sendConsoleMessage(String strStatus)

sendSyncScript

public void sendSyncScript(String script,
                           String appletName)

notifyAtomHovered

public void notifyAtomHovered(int atomIndex,
                              String strInfo)

setCallbackFunction

public void setCallbackFunction(String callbackType,
                                String callbackFunction)

createImage

public void createImage(String file,
                        String type,
                        int quality)

eval

public String eval(String strEval)

notifyFrameChanged

public void notifyFrameChanged(int frameNo,
                               int fileNo,
                               int modelNo,
                               int firstNo,
                               int LastNo)

notifyResized

public void notifyResized(int newWidth,
                          int newHeight)

functionXY

public float[][] functionXY(String functionName,
                            int x,
                            int y)