org.biojava.spice.manypanel.managers
Class AbstractChainManager

java.lang.Object
  org.biojava.spice.manypanel.managers.AbstractChainManager

All Implemented Interfaces:

ObjectManager

Direct Known Subclasses:

SequenceManager, StructureManager

public abstract class AbstractChainManager

extends Object

implements ObjectManager

Constructor Summary

AbstractChainManager()

Method Summary

void	addSequenceListener(SequenceListener li)
void	clear() clear the current reference object
void	clearDasSources()
void	clearSequenceListeners()
String	getAccessionCode()
DasCoordinateSystem	getCoordinateSystem()
SpiceDasSource[]	getDasSources() get the list of available Reference DAS servers
void	removeSequenceListener(SequenceListener li)
void	setAccessionCode(String ac)
void	setCoordinateSystem(DasCoordinateSystem coordSys)
void	setDasSources(SpiceDasSource[] sources) add reference DAS source
protected SpiceDasSource[]	toSpiceDasSource(DrawableDasSource[] dds)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractChainManager

public AbstractChainManager()

Method Detail

getAccessionCode

public String getAccessionCode()

setAccessionCode

public void setAccessionCode(String ac)

clear

public void clear()

Description copied from interface: ObjectManager

clear the current reference object

Specified by:

clear in interface ObjectManager

clearSequenceListeners

public void clearSequenceListeners()

addSequenceListener

public void addSequenceListener(SequenceListener li)

removeSequenceListener

public void removeSequenceListener(SequenceListener li)

getDasSources

public SpiceDasSource[] getDasSources()

Description copied from interface: ObjectManager

get the list of available Reference DAS servers

Specified by:

getDasSources in interface ObjectManager

Returns:

an array of das sources

getCoordinateSystem

public DasCoordinateSystem getCoordinateSystem()

Specified by:

getCoordinateSystem in interface ObjectManager

setCoordinateSystem

public void setCoordinateSystem(DasCoordinateSystem coordSys)

Specified by:

setCoordinateSystem in interface ObjectManager

setDasSources

public void setDasSources(SpiceDasSource[] sources)

add reference DAS source

Specified by:

setDasSources in interface ObjectManager

Parameters:

sources -

clearDasSources

public void clearDasSources()

toSpiceDasSource

protected SpiceDasSource[] toSpiceDasSource(DrawableDasSource[] dds)