org.biojava.spice.manypanel.managers
Class FeatureManager

java.lang.Object
  org.biojava.spice.manypanel.managers.FeatureManager

All Implemented Interfaces:

ObjectManager

public class FeatureManager

extends Object

implements ObjectManager

takes care of dealing with Features - requests them from DAS and converts them into Drawables

Author:

Andreas Prlic

Constructor Summary

FeatureManager()

Method Summary

void	addDasSourceListener(DasSourceListener dsl)
void	addFeatureRenderer(FeatureRenderer rend)
void	clear() clear the current reference object
void	clearDasSources()
void	clearSelection()
DasCoordinateSystem	getCoordinateSystem()
SpiceDasSource[]	getDasSources() get the list of available Reference DAS servers
SpiceDasSource	getKnownDasSource(SpiceDasSource ds)
void	newObject(Object object) a new object has been returned
void	newObjectRequested(String accessionCode) a new object has been requested.
void	newSequence(SequenceEvent e)
void	noObjectFound(String accessionCode)
void	selectedSeqPosition(int position)
void	selectedSeqRange(int start, int end)
void	selectionLocked(boolean flag)
void	setCoordinateSystem(DasCoordinateSystem coordSys)
void	setDasSources(SpiceDasSource[] dasSourcs) list of available Reference DAS servers

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureManager

public FeatureManager()

Method Detail

clear

public void clear()

Description copied from interface: ObjectManager

clear the current reference object

Specified by:

clear in interface ObjectManager

clearDasSources

public void clearDasSources()

addDasSourceListener

public void addDasSourceListener(DasSourceListener dsl)

getCoordinateSystem

public DasCoordinateSystem getCoordinateSystem()

Specified by:

getCoordinateSystem in interface ObjectManager

getDasSources

public SpiceDasSource[] getDasSources()

Description copied from interface: ObjectManager

get the list of available Reference DAS servers

Specified by:

getDasSources in interface ObjectManager

Returns:

an array of das sources

addFeatureRenderer

public void addFeatureRenderer(FeatureRenderer rend)

setCoordinateSystem

public void setCoordinateSystem(DasCoordinateSystem coordSys)

Specified by:

setCoordinateSystem in interface ObjectManager

getKnownDasSource

public SpiceDasSource getKnownDasSource(SpiceDasSource ds)

setDasSources

public void setDasSources(SpiceDasSource[] dasSourcs)

Description copied from interface: ObjectManager

list of available Reference DAS servers

Specified by:

setDasSources in interface ObjectManager

Parameters:

dasSourcs -

newObjectRequested

public void newObjectRequested(String accessionCode)

a new object has been requested. do feature requests.

noObjectFound

public void noObjectFound(String accessionCode)

newObject

public void newObject(Object object)

a new object has been returned

Parameters:

object - new object

newSequence

public void newSequence(SequenceEvent e)

selectedSeqPosition

public void selectedSeqPosition(int position)

selectedSeqRange

public void selectedSeqRange(int start,
                             int end)

selectionLocked

public void selectionLocked(boolean flag)

clearSelection

public void clearSelection()